D: & E: Drives stuck in MS-DOS File Mode

Made a mistake by installing the driver off my NeroCD to get my {E:} drive to work. Now my drives (D:\{Primary} & E:\{Secondary})are stuck in MS-DOS mode {very, very slow}. I've disconnected both drives and rebooted, she boots up just fine. But reboot with just my CD-ROM {D:}, I'm back in DOS.
I'm running;
Windiws 98 SE
Systemax System
550Megahertz AMD K6 w\3DNow
128Mega. installed memory
{D:\} CD-Rom; ATAPI CD-R\RW (master)
{E:\} Sony CD-RW CRX230E (slave)
Now go to my computer right click and hit Properties\
Then System Properties\ Performance and under details I get;
Drives (D:\ & E:\)
"are using MS-DOS compibility mode file system".
I may be wrong, but if I could get them off this DOS mode everything should return to normal (what ever that is, Ha!). I also tried my Driver Resources CD which should over write my Drives, but can't get it to boot up.
The wife and I would love any help, seeing it is her computer I really need to get back in operation. Thanks for any help.

 

Right click on My Computer and then Properties and then the Device Manager tab.
Look for any YELLOW marks.

 

http://support.microsoft.com/defaul...port/kb/articles/q151/9/11.asp&NoWebContent=1

 

No yellow marks (conflict, right?). Nothing out of the normal, just operating in DOS.

 

I had to disconnect both my CD-R\RW and CD-ROM to get her up and running, and it's running great as well as fast. But the minute I hook up on drive or the other, it's back to booting up SLOW and in MS-DOS. Please piont me in the right direction. Thanks!

 

Did you check for a NOIDE value that is placed in the registry which prevents Windows from making future attempts to initialize the protected-mode driver, that is talked about in the M$ link AcaCandy posted?